env

.ipynb_checkpoints/build-env-checkpoint.sh

+#!/bin/bash
+set -x
+basedir=$( cd "$(dirname "$0")" ; pwd -P )
+# mamba env update -n r-with-gdal --file "${basedir}/env_main.yaml"
+source activate base
+#install requirements packages
+mamba env update -f ${basedir}/environment.yaml
+# install the package 
+pip install git+https://github.com/remotesensinginfo/pysl4land.git

.ipynb_checkpoints/environment-checkpoint.yaml

+name: base
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+    - geopandas
+    - h5py
+    - scipy

.ipynb_checkpoints/run_sl2gis-checkpoint.sh

+#!/bin/bash
+#source activate base ??? do I have to incldue this ????
+# # $1, $2, $3, ... represent the first, second, third, etc. arguments
+# FOREST_HEIGHT_2000="input/2000_*.tif" # input or inputs????? # input in code?
+# files are downloaded here.
+INPUT_FILENAME=$(ls input/*.h5) # #  | head -1   get first input tif file.  # each time i input one. 
+# FOREST_LOSS="input/netloss_${tile}.tif"
+OUTPUT_FILENAME=$1
+basedir=$(cd "$(dirname "$0")" ; pwd -P) #  $0 represents the script name itself
+mkdir -p output
+pysl4landgeditools.py --input_file  ${INPUT_FILENAME} --output_file output/${OUTPUT_FILENAME}
\ No newline at end of file

build-env.sh

+#!/bin/bash
+set -x
+basedir=$( cd "$(dirname "$0")" ; pwd -P )
+# mamba env update -n r-with-gdal --file "${basedir}/env_main.yaml"
+source activate base
+#install requirements packages
+mamba env update -f ${basedir}/environment.yaml
+# install the package 
+pip install git+https://github.com/remotesensinginfo/pysl4land.git

environment.yaml

+name: base
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+    - geopandas
+    - h5py
+    - scipy

run_sl2gis.sh

+#!/bin/bash
+#source activate base ??? do I have to incldue this ????
+# # $1, $2, $3, ... represent the first, second, third, etc. arguments
+# FOREST_HEIGHT_2000="input/2000_*.tif" # input or inputs????? # input in code?
+# files are downloaded here.
+INPUT_FILENAME=$(ls input/*.h5) # #  | head -1   get first input tif file.  # each time i input one. 
+# FOREST_LOSS="input/netloss_${tile}.tif"
+OUTPUT_FILENAME=$1
+basedir=$(cd "$(dirname "$0")" ; pwd -P) #  $0 represents the script name itself
+mkdir -p output
+pysl4landgeditools.py --input_file  ${INPUT_FILENAME} --output_file output/${OUTPUT_FILENAME}
\ No newline at end of file