update yml packages

rio-tiler-new.yml

@@ -4,11 +4,29 @@ channels:
   - anaconda
 dependencies:
   - rio-tiler >=3.1.0
+  - rio-mucho
+  - rio-color
   - ipykernel
+  - ipython
   - ipywidgets
   - s3fs
   - rtree
   - shapely
+  - scipy
   - scikit-learn
   - pandas
-  - pystac-client
\ No newline at end of file
+  - geopandas
+  - pystac-client
+  - boto3
+  - botocore
+  - geotiff
+  - hdf4
+  - hdf5
+  - httpcore
+  - numpy
+  - s3fs
+  - rasterio
+  - zlib
+  - sqlite
+  - requests
+  - jedi
\ No newline at end of file

run_micro_dps.sh

@@ -4,6 +4,10 @@ set -eo pipefail
 
 # base dir set
 basedir=$( cd "$(dirname "$0")"; pwd -P )
+
+# force set for interactive testing 
+# basedir="/projects"
+
 echo "Basedir: $basedir"
 echo "Initial working directory: $(pwd -P)"
 
@@ -23,7 +27,6 @@ echo $MICROMAMBA_EXE
 curl -Ls https://micro.mamba.pm/api/micromamba/linux-64/latest | tar -xvj bin/micromamba
 
 MY_MAMBA_ENV="$basedir/micromamba/envs/rio-tiler-new"
-# MY_MAMBA_ENV="$MICROMAMBA_BIN_DIR/envs/rio-tiler-new"
 
 echo $PATH
 echo "micromamba version: $($MICROMAMBA_EXE --version)"
@@ -32,20 +35,9 @@ echo "micromamba version: $($MICROMAMBA_EXE --version)"
 "$MICROMAMBA_EXE" create -f "$basedir/rio-tiler-new.yml" -n "rio-tiler-new"
 
 echo "Starting algorithm in subshell"
-(
-pushd "$basedir"
-{ # try
-  echo "Running in directory: $(pwd -P)"
-  "$MICROMAMBA_EXE" run -n "rio-tiler-new" python -u -c "import FireRun; FireRun.CreekSamplerun()"
-  popd
-  echo "Copying log to special output dir"
-  cp "$basedir/running.log" ./output
-} || { # catch
-  popd
-  echo "Copying log to special output dir"
-  cp "$basedir/running.log" ./output
-}
-)
+
+echo "Running in directory: $(pwd -P)"
+"$MICROMAMBA_EXE" run -n "rio-tiler-new" python -u -c "import FireRun; FireRun.CreekSamplerun()"
 echo "Done!"
 
 exit