diff --git a/country_summaries/IPCC_classes_DPS/.ipynb_checkpoints/run_IPCC_classes_ADE-checkpoint.yml b/country_summaries/IPCC_classes_DPS/.ipynb_checkpoints/run_IPCC_classes_ADE-checkpoint.yml index 27bd79c632f4d6efa598ace83b6465316cc3d120..123ac64216c06a5951b7ba60117fb3395911c4bf 100644 --- a/country_summaries/IPCC_classes_DPS/.ipynb_checkpoints/run_IPCC_classes_ADE-checkpoint.yml +++ b/country_summaries/IPCC_classes_DPS/.ipynb_checkpoints/run_IPCC_classes_ADE-checkpoint.yml @@ -10,60 +10,60 @@ inputs: - default: 'none' description: input name: FOREST_HEIGHT_2000 - required: true - - default: 'none' - description: input + required: false + - default: 'none1' + description: input2 name: FOREST_HEIGHT_2020 - required: true - - default: 'none' - description: input + required: false + - default: 'none2' + description: input3 name: FOREST_GAIN - required: true - - default: 'none' - description: input + required: false + - default: 'none3' + description: input4 name: FOREST_LOSS - required: true - - default: 'none' - description: input + required: false + - default: 'none4' + description: input5 name: FOREST_COVER_2000 required: true - - default: 'none' - description: input + - default: 'none5' + description: input6 name: FOREST_COVER_LOSSYEAR - required: true - - default: 'none' - description: input + required: false + - default: 'none6' + description: input7 name: PLANTATIONS - required: true - - default: 'none' - description: input + required: false + - default: 'none7' + description: input8 name: IFL_rasters - required: true - - default: 'none' - description: input + required: false + - default: 'none8' + description: input9 name: primary_forest_asia required: true - - default: 'none' - description: input + - default: 'none9' + description: input10 name: primary_forest_sa required: true - - default: 'none' - description: input + - default: 'none0' + description: input11 name: primary_forest_africa - required: true - - default: 'none' - description: input + required: false + - default: 'none11' + description: input12 name: EcoCont - required: true + required: false positional: - - default: 'none' + - default: 'none12' description: position1 name: tile - required: true - - default: 'none' + required: false + - default: 'none13' description: position2 name: output_file - required: true + required: false queue: maap-dps-worker-32gb repository_url: https://repo.ops.maap-project.org/lduncanson/biomass_harmonization.git run_command: biomass_harmonization/country_summaries/IPCC_classes_DPS/run_IPCC_classes_ADE.sh \ No newline at end of file diff --git a/country_summaries/IPCC_classes_DPS/IPCC_GEDI_Table4.7.ipynb b/country_summaries/IPCC_classes_DPS/IPCC_GEDI_Table4.7.ipynb index ecd7332a159245cf8ad977c9e49bf916eac36a74..dc103ae775c72c7a66878bc230f4fda9398dd151 100644 --- a/country_summaries/IPCC_classes_DPS/IPCC_GEDI_Table4.7.ipynb +++ b/country_summaries/IPCC_classes_DPS/IPCC_GEDI_Table4.7.ipynb @@ -335,7 +335,7 @@ }, { "cell_type": "code", - "execution_count": 35, + "execution_count": 11, "id": "82dba01f-ac52-4ded-a0ae-bbd06d12f241", "metadata": { "tags": [] @@ -344,10 +344,10 @@ { "data": { "text/plain": [ - "'{\"code\": 200, \"message\": {\"id\": \"f613ab957534961cc9a4c1ba989811e9ae44557e\", \"short_id\": \"f613ab95\", \"created_at\": \"2023-08-30T19:48:43.000+00:00\", \"parent_ids\": [\"2beb6f103b02b27cab5fb52f8d762e8f30169d29\"], \"title\": \"Registering algorithm: run_IPCC_classes_ADE\", \"message\": \"Registering algorithm: run_IPCC_classes_ADE\", \"author_name\": \"root\", \"author_email\": \"root@70b089753c71\", \"authored_date\": \"2023-08-30T19:48:43.000+00:00\", \"committer_name\": \"root\", \"committer_email\": \"root@70b089753c71\", \"committed_date\": \"2023-08-30T19:48:43.000+00:00\", \"trailers\": {}, \"web_url\": \"https://repo.maap-project.org/root/register-job-hysds-v4/-/commit/f613ab957534961cc9a4c1ba989811e9ae44557e\", \"stats\": {\"additions\": 0, \"deletions\": 0, \"total\": 0}, \"status\": \"pending\", \"project_id\": 3, \"last_pipeline\": {\"id\": 7506, \"iid\": 123, \"project_id\": 3, \"sha\": \"f613ab957534961cc9a4c1ba989811e9ae44557e\", \"ref\": \"main\", \"status\": \"pending\", \"source\": \"push\", \"created_at\": \"2023-08-30T19:48:45.110Z\", \"updated_at\": \"2023-08-30T19:48:45.638Z\", \"web_url\": \"https://repo.maap-project.org/root/register-job-hysds-v4/-/pipelines/7506\"}, \"job_web_url\": \"https://repo.maap-project.org/root/register-job-hysds-v4/-/jobs/7681\", \"job_log_url\": \"https://repo.maap-project.org/root/register-job-hysds-v4/-/jobs/7681/raw\"}}\\n'" + "'{\"code\": 200, \"message\": {\"id\": \"0e77bf95400e4379327df0279edd5091c1c1899b\", \"short_id\": \"0e77bf95\", \"created_at\": \"2023-08-31T03:04:27.000+00:00\", \"parent_ids\": [\"c6844ccb7ab4358ca27d6861627cf620c3cd407d\"], \"title\": \"Registering algorithm: run_IPCC_classes_ADE\", \"message\": \"Registering algorithm: run_IPCC_classes_ADE\", \"author_name\": \"root\", \"author_email\": \"root@70b089753c71\", \"authored_date\": \"2023-08-31T03:04:27.000+00:00\", \"committer_name\": \"root\", \"committer_email\": \"root@70b089753c71\", \"committed_date\": \"2023-08-31T03:04:27.000+00:00\", \"trailers\": {}, \"web_url\": \"https://repo.maap-project.org/root/register-job-hysds-v4/-/commit/0e77bf95400e4379327df0279edd5091c1c1899b\", \"stats\": {\"additions\": 1, \"deletions\": 1, \"total\": 2}, \"status\": \"created\", \"project_id\": 3, \"last_pipeline\": {\"id\": 7514, \"iid\": 125, \"project_id\": 3, \"sha\": \"0e77bf95400e4379327df0279edd5091c1c1899b\", \"ref\": \"main\", \"status\": \"created\", \"source\": \"push\", \"created_at\": \"2023-08-31T03:04:28.564Z\", \"updated_at\": \"2023-08-31T03:04:28.564Z\", \"web_url\": \"https://repo.maap-project.org/root/register-job-hysds-v4/-/pipelines/7514\"}, \"job_web_url\": \"https://repo.maap-project.org/root/register-job-hysds-v4/-/jobs/7689\", \"job_log_url\": \"https://repo.maap-project.org/root/register-job-hysds-v4/-/jobs/7689/raw\"}}\\n'" ] }, - "execution_count": 35, + "execution_count": 11, "metadata": {}, "output_type": "execute_result" } @@ -367,7 +367,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": 9, "id": "f108f96f-3601-4d23-a159-108287110eb2", "metadata": { "tags": [] @@ -376,10 +376,10 @@ { "data": { "text/plain": [ - "{'job_id': 'c91682c9-b980-49e7-8ff1-10bff61a913d', 'status': 'Accepted', 'machine_type': None, 'architecture': None, 'machine_memory_size': None, 'directory_size': None, 'operating_system': None, 'job_start_time': None, 'job_end_time': None, 'job_duration_seconds': None, 'cpu_usage': None, 'cache_usage': None, 'mem_usage': None, 'max_mem_usage': None, 'swap_usage': None, 'read_io_stats': None, 'write_io_stats': None, 'sync_io_stats': None, 'async_io_stats': None, 'total_io_stats': None, 'error_details': None, 'response_code': 200, 'outputs': []}" + "{'job_id': '1bd6a54e-57e6-447d-8cd2-9117c2cd8a93', 'status': 'Accepted', 'machine_type': None, 'architecture': None, 'machine_memory_size': None, 'directory_size': None, 'operating_system': None, 'job_start_time': None, 'job_end_time': None, 'job_duration_seconds': None, 'cpu_usage': None, 'cache_usage': None, 'mem_usage': None, 'max_mem_usage': None, 'swap_usage': None, 'read_io_stats': None, 'write_io_stats': None, 'sync_io_stats': None, 'async_io_stats': None, 'total_io_stats': None, 'error_details': None, 'response_code': 200, 'outputs': []}" ] }, - "execution_count": 5, + "execution_count": 9, "metadata": {}, "output_type": "execute_result" } @@ -439,7 +439,7 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": 10, "id": "4469b23d-8942-47fc-9e1d-e5363aea98c6", "metadata": { "tags": [] @@ -448,19 +448,19 @@ { "data": { "text/plain": [ - "['http://maap-ops-workspace.s3-website-us-west-2.amazonaws.com/dataset/triaged_job/run_IPCC_classes_ADE/IPCC_classes/2023/08/31/c91682c9-b980-49e7-8ff1-10bff61a913d',\n", - " 's3://s3-us-west-2.amazonaws.com:80/maap-ops-workspace/dataset/triaged_job/run_IPCC_classes_ADE/IPCC_classes/2023/08/31/c91682c9-b980-49e7-8ff1-10bff61a913d',\n", - " 'https://s3.console.aws.amazon.com/s3/buckets/maap-ops-workspace/dataset/triaged_job/run_IPCC_classes_ADE/IPCC_classes/2023/08/31/c91682c9-b980-49e7-8ff1-10bff61a913d/?region=us-east-1&tab=overview',\n", + "['http://maap-ops-workspace.s3-website-us-west-2.amazonaws.com/dataset/triaged_job/run_IPCC_classes_ADE/IPCC_classes/2023/08/31/1bd6a54e-57e6-447d-8cd2-9117c2cd8a93',\n", + " 's3://s3-us-west-2.amazonaws.com:80/maap-ops-workspace/dataset/triaged_job/run_IPCC_classes_ADE/IPCC_classes/2023/08/31/1bd6a54e-57e6-447d-8cd2-9117c2cd8a93',\n", + " 'https://s3.console.aws.amazon.com/s3/buckets/maap-ops-workspace/dataset/triaged_job/run_IPCC_classes_ADE/IPCC_classes/2023/08/31/1bd6a54e-57e6-447d-8cd2-9117c2cd8a93/?region=us-east-1&tab=overview',\n", " '+ export HOME=/root\\n+ HOME=/root\\n+ exec /docker-stats-on-exit-shim _docker_stats.json /app/dps_wrapper.sh /app/biomass_harmonization/country_summaries/IPCC_classes_DPS/run_IPCC_classes_ADE.sh 10N_080W 10N_080W_IPCC_classes_new_ade.tif\\n+ /app/biomass_harmonization/country_summaries/IPCC_classes_DPS/run_IPCC_classes_ADE.sh 10N_080W 10N_080W_IPCC_classes_new_ade.tif\\nusage: IPCC_GEDI_Table4.7.py [-h] [--FOREST_HEIGHT_2000 FOREST_HEIGHT_2000]\\n [--FOREST_HEIGHT_2020 FOREST_HEIGHT_2020]\\n [--FOREST_GAIN FOREST_GAIN]\\n [--FOREST_LOSS FOREST_LOSS]\\n [--FOREST_COVER_2000 FOREST_COVER_2000]\\n [--FOREST_COVER_LOSSYEAR FOREST_COVER_LOSSYEAR]\\n [--PLANTATIONS PLANTATIONS]\\n [--IFL_rasters IFL_RASTERS]\\n [--primary_forest_asia PRIMARY_FOREST_ASIA]\\n [--primary_forest_sa PRIMARY_FOREST_SA]\\n [--primary_forest_africa PRIMARY_FOREST_AFRICA]\\n [--EcoCont ECOCONT] [--tile TILE]\\n [--output_file OUTPUT_FILE]\\nIPCC_GEDI_Table4.7.py: error: argument --FOREST_GAIN: expected one argument\\n+ cp _stderr.txt _alt_traceback.txt\\n']" ] }, - "execution_count": 7, + "execution_count": 10, "metadata": {}, "output_type": "execute_result" } ], "source": [ - "JOB_ID = 'c91682c9-b980-49e7-8ff1-10bff61a913d'\n", + "JOB_ID = '1bd6a54e-57e6-447d-8cd2-9117c2cd8a93'\n", "maap.getJobStatus(JOB_ID)\n", "maap.getJobResult(JOB_ID)" ] diff --git a/country_summaries/IPCC_classes_DPS/run_IPCC_classes_ADE.yml b/country_summaries/IPCC_classes_DPS/run_IPCC_classes_ADE.yml index 27bd79c632f4d6efa598ace83b6465316cc3d120..123ac64216c06a5951b7ba60117fb3395911c4bf 100644 --- a/country_summaries/IPCC_classes_DPS/run_IPCC_classes_ADE.yml +++ b/country_summaries/IPCC_classes_DPS/run_IPCC_classes_ADE.yml @@ -10,60 +10,60 @@ inputs: - default: 'none' description: input name: FOREST_HEIGHT_2000 - required: true - - default: 'none' - description: input + required: false + - default: 'none1' + description: input2 name: FOREST_HEIGHT_2020 - required: true - - default: 'none' - description: input + required: false + - default: 'none2' + description: input3 name: FOREST_GAIN - required: true - - default: 'none' - description: input + required: false + - default: 'none3' + description: input4 name: FOREST_LOSS - required: true - - default: 'none' - description: input + required: false + - default: 'none4' + description: input5 name: FOREST_COVER_2000 required: true - - default: 'none' - description: input + - default: 'none5' + description: input6 name: FOREST_COVER_LOSSYEAR - required: true - - default: 'none' - description: input + required: false + - default: 'none6' + description: input7 name: PLANTATIONS - required: true - - default: 'none' - description: input + required: false + - default: 'none7' + description: input8 name: IFL_rasters - required: true - - default: 'none' - description: input + required: false + - default: 'none8' + description: input9 name: primary_forest_asia required: true - - default: 'none' - description: input + - default: 'none9' + description: input10 name: primary_forest_sa required: true - - default: 'none' - description: input + - default: 'none0' + description: input11 name: primary_forest_africa - required: true - - default: 'none' - description: input + required: false + - default: 'none11' + description: input12 name: EcoCont - required: true + required: false positional: - - default: 'none' + - default: 'none12' description: position1 name: tile - required: true - - default: 'none' + required: false + - default: 'none13' description: position2 name: output_file - required: true + required: false queue: maap-dps-worker-32gb repository_url: https://repo.ops.maap-project.org/lduncanson/biomass_harmonization.git run_command: biomass_harmonization/country_summaries/IPCC_classes_DPS/run_IPCC_classes_ADE.sh \ No newline at end of file