From ad1ff19301a1e8e3cd1b4d03ad3d70f041ed3a6d Mon Sep 17 00:00:00 2001
From: Alex Rojas <a.rojas8907@gmail.com>
Date: Sat, 14 Sep 2024 19:32:45 -0700
Subject: [PATCH] edited the output vals to include more rh vals.
---
.ipynb_checkpoints/build-env-checkpoint.sh | 9 ++-------
.ipynb_checkpoints/main-checkpoint.py | 13 ++++++++++++-
.ipynb_checkpoints/run-checkpoint.sh | 3 ++-
__pycache__/get_gedi_data.cpython-310.pyc | Bin 0 -> 1234 bytes
__pycache__/pgap.cpython-310.pyc | Bin 0 -> 7095 bytes
build-env.sh | 2 +-
main.py | 13 ++++++++++++-
run.sh | 3 ++-
8 files changed, 31 insertions(+), 12 deletions(-)
create mode 100644 __pycache__/get_gedi_data.cpython-310.pyc
create mode 100644 __pycache__/pgap.cpython-310.pyc
diff --git a/.ipynb_checkpoints/build-env-checkpoint.sh b/.ipynb_checkpoints/build-env-checkpoint.sh
index 802ebb2..81d333c 100644
--- a/.ipynb_checkpoints/build-env-checkpoint.sh
+++ b/.ipynb_checkpoints/build-env-checkpoint.sh
@@ -3,17 +3,12 @@
# source activate base
basedir=$( cd "$(dirname "$0")" ; pwd -P)
echo installing environment...
-mamba env create --name osgeo-env -f ${basedir}/environment.yml
-# conda create --name osgeo-env --clone base
-# source activate osgeo-env
-# mamba install -c conda-forge scipy -y
-# mamba install -c conda-forge h5py -y
-# mamba install -c conda-forge geopandas -y
+conda env create --name osgeo-env -f ${basedir}/environment.yml
# Install the maap.py environment
echo trying to install maap-py...
source activate osgeo-env
-git clone --single-branch --branch v3.0.1 https://github.com/MAAP-Project/maap-py.git
+git clone --single-branch --branch v4.1.0 https://github.com/MAAP-Project/maap-py.git
cd maap-py
pip install -e .
echo installed maap-py package!
diff --git a/.ipynb_checkpoints/main-checkpoint.py b/.ipynb_checkpoints/main-checkpoint.py
index 802d7c7..c416625 100644
--- a/.ipynb_checkpoints/main-checkpoint.py
+++ b/.ipynb_checkpoints/main-checkpoint.py
@@ -186,8 +186,19 @@ if __name__ == '__main__':
biFP_list = []
gap_list = []
lai_list = []
- rh_list = []
cval_list = []
+ rh98_list = []
+ rh95_list = []
+ rh90_list = []
+ rh85_list = []
+ rh80_list = []
+ rh75_list = []
+ rh70_list = []
+ rh65_list = []
+ rh60_list = []
+ rh55_list = []
+ rh50_list = []
+
print("Running pgap iteratively...")
for i in idx:
results = gedi_bioindex(i)
diff --git a/.ipynb_checkpoints/run-checkpoint.sh b/.ipynb_checkpoints/run-checkpoint.sh
index 047fbb5..d6d50b9 100644
--- a/.ipynb_checkpoints/run-checkpoint.sh
+++ b/.ipynb_checkpoints/run-checkpoint.sh
@@ -5,6 +5,7 @@ basedir=$( cd "$(dirname "$0")" ; pwd -P)
# Activate environment that was created in the builed-env.sh file
source activate osgeo-env
+# source activate /projects/env/osgeo-env
# Create output dir
# OUTPUTDIR="${PWD}/output"
@@ -14,4 +15,4 @@ L1B_URL=$1
L2A_URL=$2 # e.g. GEDI01_B or GEDI02_A
# YR=$3
# python ${basedir}/main.py ${L1B_URL} ${L2A_URL} ${OUTPUTDIR}
-python ${basedir}/main.py ${L1B_URL} ${L2A_URL} output
+python ${basedir}/main.py ${L1B_URL} ${L2A_URL} output
\ No newline at end of file
diff --git a/__pycache__/get_gedi_data.cpython-310.pyc b/__pycache__/get_gedi_data.cpython-310.pyc
new file mode 100644
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diff --git a/__pycache__/pgap.cpython-310.pyc b/__pycache__/pgap.cpython-310.pyc
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diff --git a/build-env.sh b/build-env.sh
index 56bface..81d333c 100644
--- a/build-env.sh
+++ b/build-env.sh
@@ -8,7 +8,7 @@ conda env create --name osgeo-env -f ${basedir}/environment.yml
# Install the maap.py environment
echo trying to install maap-py...
source activate osgeo-env
-git clone --single-branch --branch v3.1.4 https://github.com/MAAP-Project/maap-py.git
+git clone --single-branch --branch v4.1.0 https://github.com/MAAP-Project/maap-py.git
cd maap-py
pip install -e .
echo installed maap-py package!
diff --git a/main.py b/main.py
index 802d7c7..c416625 100644
--- a/main.py
+++ b/main.py
@@ -186,8 +186,19 @@ if __name__ == '__main__':
biFP_list = []
gap_list = []
lai_list = []
- rh_list = []
cval_list = []
+ rh98_list = []
+ rh95_list = []
+ rh90_list = []
+ rh85_list = []
+ rh80_list = []
+ rh75_list = []
+ rh70_list = []
+ rh65_list = []
+ rh60_list = []
+ rh55_list = []
+ rh50_list = []
+
print("Running pgap iteratively...")
for i in idx:
results = gedi_bioindex(i)
diff --git a/run.sh b/run.sh
index 047fbb5..d6d50b9 100644
--- a/run.sh
+++ b/run.sh
@@ -5,6 +5,7 @@ basedir=$( cd "$(dirname "$0")" ; pwd -P)
# Activate environment that was created in the builed-env.sh file
source activate osgeo-env
+# source activate /projects/env/osgeo-env
# Create output dir
# OUTPUTDIR="${PWD}/output"
@@ -14,4 +15,4 @@ L1B_URL=$1
L2A_URL=$2 # e.g. GEDI01_B or GEDI02_A
# YR=$3
# python ${basedir}/main.py ${L1B_URL} ${L2A_URL} ${OUTPUTDIR}
-python ${basedir}/main.py ${L1B_URL} ${L2A_URL} output
+python ${basedir}/main.py ${L1B_URL} ${L2A_URL} output
\ No newline at end of file
--
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