From a1e2f7f05c3bc1796bd9836e92a7fc55faa5b7a5 Mon Sep 17 00:00:00 2001
From: Alex Rojas <a.rojas8907@gmail.com>
Date: Thu, 14 Mar 2024 19:30:11 -0700
Subject: [PATCH] updated run.sh file
---
.ipynb_checkpoints/run-checkpoint.sh | 2 +-
notebooks/run-gedi-biomass.ipynb | 28 +++++++++++++++++++++++-----
run.sh | 2 +-
3 files changed, 25 insertions(+), 7 deletions(-)
diff --git a/.ipynb_checkpoints/run-checkpoint.sh b/.ipynb_checkpoints/run-checkpoint.sh
index 4a8471e..f959a6f 100644
--- a/.ipynb_checkpoints/run-checkpoint.sh
+++ b/.ipynb_checkpoints/run-checkpoint.sh
@@ -8,7 +8,7 @@ basedir=$( cd "$(dirname "$0")" ; pwd -P)
# Create output dir
# OUTPUTDIR="${PWD}/output"
-# mkdir -p output
+mkdir -p output
# INPUT_FILES
L1B_URL=$1
L2A_URL=$2 # e.g. GEDI01_B or GEDI02_A
diff --git a/notebooks/run-gedi-biomass.ipynb b/notebooks/run-gedi-biomass.ipynb
index ca555ed..c05b695 100644
--- a/notebooks/run-gedi-biomass.ipynb
+++ b/notebooks/run-gedi-biomass.ipynb
@@ -55,7 +55,26 @@
"metadata": {
"tags": []
},
- "outputs": [],
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "on file num: 200\r"
+ ]
+ },
+ {
+ "ename": "KeyboardInterrupt",
+ "evalue": "",
+ "output_type": "error",
+ "traceback": [
+ "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
+ "\u001b[0;31mKeyboardInterrupt\u001b[0m Traceback (most recent call last)",
+ "Cell \u001b[0;32mIn[3], line 38\u001b[0m\n\u001b[1;32m 36\u001b[0m \u001b[38;5;28mprint\u001b[39m(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mon file num: \u001b[39m\u001b[38;5;124m\"\u001b[39m, counter, end\u001b[38;5;241m=\u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;130;01m\\r\u001b[39;00m\u001b[38;5;124m'\u001b[39m)\n\u001b[1;32m 37\u001b[0m \u001b[38;5;66;03m# break\u001b[39;00m\n\u001b[0;32m---> 38\u001b[0m \u001b[43mtime\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43msleep\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;241;43m900\u001b[39;49m\u001b[43m)\u001b[49m\n\u001b[1;32m 39\u001b[0m counter\u001b[38;5;241m+\u001b[39m\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m1\u001b[39m\n",
+ "\u001b[0;31mKeyboardInterrupt\u001b[0m: "
+ ]
+ }
+ ],
"source": [
"# Change to appropriate filepaths for urls\n",
"l1b_urls_fpath = \"../GEDI-L1B-2021-URLS.txt\"\n",
@@ -86,16 +105,15 @@
" algo_id=\"arojas_biomass_gedi\",\n",
" version=\"master\",\n",
" username=\"arojearthdata\",\n",
- " queue=\"maap-dps-worker-16gb\",\n",
+ " queue=\"maap-dps-worker-8gb\",\n",
" L1B_URL=l1b_fp,\n",
" L2A_URL=l2a_fp)\n",
" jobs_list.append(job)\n",
" \n",
- " if counter%20==0:\n",
+ " if counter%100==0:\n",
" print(\"on file num: \", counter, end='\\r')\n",
- " break\n",
" # break\n",
- " # time.sleep(1200)\n",
+ " time.sleep(900)\n",
" counter+=1"
]
},
diff --git a/run.sh b/run.sh
index 4a8471e..f959a6f 100644
--- a/run.sh
+++ b/run.sh
@@ -8,7 +8,7 @@ basedir=$( cd "$(dirname "$0")" ; pwd -P)
# Create output dir
# OUTPUTDIR="${PWD}/output"
-# mkdir -p output
+mkdir -p output
# INPUT_FILES
L1B_URL=$1
L2A_URL=$2 # e.g. GEDI01_B or GEDI02_A
--
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