From 6e057b119c906862300f3de271a7bd8bfb326303 Mon Sep 17 00:00:00 2001
From: Alex Rojas <a.rojas8907@gmail.com>
Date: Wed, 20 Sep 2023 00:28:42 +0000
Subject: [PATCH] updated build.sh file to output info to console.

---
 build-env.sh                     |  3 ++-
 notebooks/run-gedi-biomass.ipynb | 12 ++++++------
 2 files changed, 8 insertions(+), 7 deletions(-)

diff --git a/build-env.sh b/build-env.sh
index 5b1de5b..60d3113 100644
--- a/build-env.sh
+++ b/build-env.sh
@@ -3,7 +3,8 @@
 # source activate base
 basedir=$( cd "$(dirname "$0")" ; pwd -P)
 echo installing environment...
-mamba env create -f ${basedir}/environment.yml
+mamba env create --name osgeo-env -f ${basedir}/environment.yml
+conda env list
 # conda create --name osgeo-env --clone base
 # source activate osgeo-env
 # mamba install -c conda-forge scipy -y
diff --git a/notebooks/run-gedi-biomass.ipynb b/notebooks/run-gedi-biomass.ipynb
index 3078839..89f3f09 100644
--- a/notebooks/run-gedi-biomass.ipynb
+++ b/notebooks/run-gedi-biomass.ipynb
@@ -97,7 +97,7 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "[{'job_id': '44d040c7-4db6-44af-817a-5c2cc7cd32f0', 'status': 'Running', 'machine_type': None, 'architecture': None, 'machine_memory_size': None, 'directory_size': None, 'operating_system': None, 'job_start_time': None, 'job_end_time': None, 'job_duration_seconds': None, 'cpu_usage': None, 'cache_usage': None, 'mem_usage': None, 'max_mem_usage': None, 'swap_usage': None, 'read_io_stats': None, 'write_io_stats': None, 'sync_io_stats': None, 'async_io_stats': None, 'total_io_stats': None, 'error_details': None, 'response_code': 200, 'outputs': []}]\n"
+      "[{'job_id': '57289b00-6800-408a-8d6b-03fb449b5bba', 'status': 'Running', 'machine_type': None, 'architecture': None, 'machine_memory_size': None, 'directory_size': None, 'operating_system': None, 'job_start_time': None, 'job_end_time': None, 'job_duration_seconds': None, 'cpu_usage': None, 'cache_usage': None, 'mem_usage': None, 'max_mem_usage': None, 'swap_usage': None, 'read_io_stats': None, 'write_io_stats': None, 'sync_io_stats': None, 'async_io_stats': None, 'total_io_stats': None, 'error_details': None, 'response_code': 200, 'outputs': []}]\n"
      ]
     }
    ],
@@ -116,7 +116,7 @@
      "output_type": "stream",
      "text": [
       "Running\n",
-      "44d040c7-4db6-44af-817a-5c2cc7cd32f0\n"
+      "57289b00-6800-408a-8d6b-03fb449b5bba\n"
      ]
     }
    ],
@@ -130,7 +130,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 10,
+   "execution_count": 7,
    "id": "2018077f-9640-4e70-bd01-a9d939b3626a",
    "metadata": {},
    "outputs": [
@@ -139,7 +139,7 @@
      "output_type": "stream",
      "text": [
       "Failed\n",
-      "44d040c7-4db6-44af-817a-5c2cc7cd32f0\n"
+      "57289b00-6800-408a-8d6b-03fb449b5bba\n"
      ]
     }
    ],
@@ -153,7 +153,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 11,
+   "execution_count": 8,
    "id": "873e9ea7-d6cb-4bb9-b082-5bffb4026615",
    "metadata": {},
    "outputs": [
@@ -161,7 +161,7 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "['http://maap-ops-workspace.s3-website-us-west-2.amazonaws.com/dataset/triaged_job/arojas_biomass_gedi_conus/master/2023/09/14/44d040c7-4db6-44af-817a-5c2cc7cd32f0', 's3://s3-us-west-2.amazonaws.com:80/maap-ops-workspace/dataset/triaged_job/arojas_biomass_gedi_conus/master/2023/09/14/44d040c7-4db6-44af-817a-5c2cc7cd32f0', 'https://s3.console.aws.amazon.com/s3/buckets/maap-ops-workspace/dataset/triaged_job/arojas_biomass_gedi_conus/master/2023/09/14/44d040c7-4db6-44af-817a-5c2cc7cd32f0/?region=us-east-1&tab=overview', '+ export HOME=/root\\n+ HOME=/root\\n+ exec /docker-stats-on-exit-shim _docker_stats.json /app/dps_wrapper.sh /app/biomass-gedi-conus/run.sh \\'https://e4ftl01.cr.usgs.gov//GEDI_L1_L2/GEDI/GEDI01_B.002/2021.05.31/GEDI01_B_2021151223415_O13976_02_T00676_02_005_02_V002.h5\\n\\' https://e4ftl01.cr.usgs.gov//GEDI_L1_L2/GEDI/GEDI02_A.002/2021.05.31/GEDI02_A_2021151223415_O13976_02_T00676_02_003_02_V002.h5\\n+ /app/biomass-gedi-conus/run.sh \\'https://e4ftl01.cr.usgs.gov//GEDI_L1_L2/GEDI/GEDI01_B.002/2021.05.31/GEDI01_B_2021151223415_O13976_02_T00676_02_005_02_V002.h5\\n\\' https://e4ftl01.cr.usgs.gov//GEDI_L1_L2/GEDI/GEDI02_A.002/2021.05.31/GEDI02_A_2021151223415_O13976_02_T00676_02_003_02_V002.h5\\nTraceback (most recent call last):\\n  File \"/app/biomass-gedi-conus/main.py\", line 22, in <module>\\n    from download_gedi import download_gedi\\n  File \"/app/biomass-gedi-conus/download_gedi.py\", line 3, in <module>\\n    from maap.maap import MAAP\\nModuleNotFoundError: No module named \\'maap\\'\\n+ cp _stderr.txt _alt_traceback.txt\\n']\n"
+      "['http://maap-ops-workspace.s3-website-us-west-2.amazonaws.com/dataset/triaged_job/arojas_biomass_gedi_conus/master/2023/09/20/57289b00-6800-408a-8d6b-03fb449b5bba', 's3://s3-us-west-2.amazonaws.com:80/maap-ops-workspace/dataset/triaged_job/arojas_biomass_gedi_conus/master/2023/09/20/57289b00-6800-408a-8d6b-03fb449b5bba', 'https://s3.console.aws.amazon.com/s3/buckets/maap-ops-workspace/dataset/triaged_job/arojas_biomass_gedi_conus/master/2023/09/20/57289b00-6800-408a-8d6b-03fb449b5bba/?region=us-east-1&tab=overview', '+ export HOME=/root\\n+ HOME=/root\\n+ exec /docker-stats-on-exit-shim _docker_stats.json /app/dps_wrapper.sh /app/biomass-gedi-conus/run.sh \\'https://e4ftl01.cr.usgs.gov//GEDI_L1_L2/GEDI/GEDI01_B.002/2021.05.31/GEDI01_B_2021151223415_O13976_02_T00676_02_005_02_V002.h5\\n\\' https://e4ftl01.cr.usgs.gov//GEDI_L1_L2/GEDI/GEDI02_A.002/2021.05.31/GEDI02_A_2021151223415_O13976_02_T00676_02_003_02_V002.h5\\n+ /app/biomass-gedi-conus/run.sh \\'https://e4ftl01.cr.usgs.gov//GEDI_L1_L2/GEDI/GEDI01_B.002/2021.05.31/GEDI01_B_2021151223415_O13976_02_T00676_02_005_02_V002.h5\\n\\' https://e4ftl01.cr.usgs.gov//GEDI_L1_L2/GEDI/GEDI02_A.002/2021.05.31/GEDI02_A_2021151223415_O13976_02_T00676_02_003_02_V002.h5\\nTraceback (most recent call last):\\n  File \"/app/biomass-gedi-conus/main.py\", line 22, in <module>\\n    from download_gedi import download_gedi\\n  File \"/app/biomass-gedi-conus/download_gedi.py\", line 3, in <module>\\n    from maap.maap import MAAP\\nModuleNotFoundError: No module named \\'maap\\'\\n+ cp _stderr.txt _alt_traceback.txt\\n']\n"
      ]
     }
    ],
-- 
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