From 5de8115fced907b9eec5da874d02a011b088d330 Mon Sep 17 00:00:00 2001
From: Alex Rojas <a.rojas8907@gmail.com>
Date: Wed, 13 Sep 2023 04:42:24 +0000
Subject: [PATCH] updated build-env.sh and run.sh
---
build-env.sh | 5 ++---
notebooks/run-gedi-biomass.ipynb | 6 +++---
run.sh | 2 +-
3 files changed, 6 insertions(+), 7 deletions(-)
diff --git a/build-env.sh b/build-env.sh
index b41f2ff..cbb877f 100644
--- a/build-env.sh
+++ b/build-env.sh
@@ -2,12 +2,11 @@
# source activate base
basedir=$( cd "$(dirname "$0")" ; pwd -P)
-conda env list
echo installing environment...
-conda env create -f ${basedir}/environment.yml
+mamba env create -f ${basedir}/environment.yml
# Install the maap.py environment
-conda activate osgeo-env
+source activate osgeo-env
git clone --single-branch --branch v3.0.1 https://github.com/MAAP-Project/maap-py.git ${basedir}
cd ${basedir}/maap-py
pip install -e .
diff --git a/notebooks/run-gedi-biomass.ipynb b/notebooks/run-gedi-biomass.ipynb
index 662b2db..750f834 100644
--- a/notebooks/run-gedi-biomass.ipynb
+++ b/notebooks/run-gedi-biomass.ipynb
@@ -197,9 +197,9 @@
],
"metadata": {
"kernelspec": {
- "display_name": "osgeo-env-v1",
+ "display_name": "Python 3 (ipykernel)",
"language": "python",
- "name": "osgeo-env-v1"
+ "name": "python3"
},
"language_info": {
"codemirror_mode": {
@@ -211,7 +211,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.11.4"
+ "version": "3.10.8"
}
},
"nbformat": 4,
diff --git a/run.sh b/run.sh
index 265d70b..623a043 100644
--- a/run.sh
+++ b/run.sh
@@ -4,7 +4,7 @@
basedir=$( cd "$(dirname "$0")" ; pwd -P)
# Activate environment that was created in the builed-env.sh file
-source activate osgeo-env-v1
+source activate osgeo-env
# Create output dir
OUTPUTDIR="${PWD}/output"
--
GitLab