diff --git a/main.py b/main.py index 6a39c4c98138cd569abe0dade4b3c8596e758849..12d2ac05b01db81ab4b0f58ca776da8e1520c8c0 100644 --- a/main.py +++ b/main.py @@ -123,7 +123,7 @@ if __name__ == '__main__': orbit_num = re.findall("O[0-9]{5}", l1b_basename)[0] track_num = re.findall("T[0-9]{5}", l1b_basename)[0] date_str = re.findall("[0-9]{13}", l1b_basename)[0] - outfp = os.path.join(outdir, f"GEDI_bioindex_{date_str}_{orbit_num}_{track_num}.csv") + outfp = os.path.join(outdir, "output", f"GEDI_bioindex_{date_str}_{orbit_num}_{track_num}.csv") # init df_list to concat afterwards df_list = [] @@ -194,7 +194,6 @@ if __name__ == '__main__': try: out_df = pd.concat(df_list, axis=0, ignore_index=True) out_df.to_csv(outfp, index=False) - out_df.to_csv(outfp, "output", index=False) except: print("Couldnt save file: ", l1b_fp) sys.exit() diff --git a/notebooks/run-gedi-biomass.ipynb b/notebooks/run-gedi-biomass.ipynb index 1c08f840f72910e009ac266fbdf765ae16fc1c1c..148ba05ffee251c1c24c26f9e43f4c6edd8955c5 100644 --- a/notebooks/run-gedi-biomass.ipynb +++ b/notebooks/run-gedi-biomass.ipynb @@ -98,7 +98,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "[{'job_id': 'be530e9c-8c8f-4680-b133-9db2fab35056', 'status': 'Accepted', 'machine_type': None, 'architecture': None, 'machine_memory_size': None, 'directory_size': None, 'operating_system': None, 'job_start_time': None, 'job_end_time': None, 'job_duration_seconds': None, 'cpu_usage': None, 'cache_usage': None, 'mem_usage': None, 'max_mem_usage': None, 'swap_usage': None, 'read_io_stats': None, 'write_io_stats': None, 'sync_io_stats': None, 'async_io_stats': None, 'total_io_stats': None, 'error_details': None, 'response_code': 200, 'outputs': []}]\n" + "[{'job_id': '9e4d8c3e-c8e2-47df-82cf-e9f0f4357ce8', 'status': 'Accepted', 'machine_type': None, 'architecture': None, 'machine_memory_size': None, 'directory_size': None, 'operating_system': None, 'job_start_time': None, 'job_end_time': None, 'job_duration_seconds': None, 'cpu_usage': None, 'cache_usage': None, 'mem_usage': None, 'max_mem_usage': None, 'swap_usage': None, 'read_io_stats': None, 'write_io_stats': None, 'sync_io_stats': None, 'async_io_stats': None, 'total_io_stats': None, 'error_details': None, 'response_code': 200, 'outputs': []}]\n" ] } ], @@ -117,7 +117,7 @@ "output_type": "stream", "text": [ "Accepted\n", - "be530e9c-8c8f-4680-b133-9db2fab35056\n" + "7c2243dc-d90c-4ac0-8d57-6651f98b1b10\n" ] } ], @@ -131,7 +131,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": 10, "id": "2018077f-9640-4e70-bd01-a9d939b3626a", "metadata": {}, "outputs": [ @@ -140,7 +140,7 @@ "output_type": "stream", "text": [ "Succeeded\n", - "be530e9c-8c8f-4680-b133-9db2fab35056\n" + "7c2243dc-d90c-4ac0-8d57-6651f98b1b10\n" ] } ], @@ -154,7 +154,7 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": 11, "id": "873e9ea7-d6cb-4bb9-b082-5bffb4026615", "metadata": {}, "outputs": [ @@ -162,7 +162,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "['http://maap-ops-workspace.s3-website-us-west-2.amazonaws.com/arojearthdata/dps_output/arojas_biomass_gedi/master/single_file_test_run/2023/10/19/01/10/48/306256', 's3://s3.us-west-2.amazonaws.com:80/maap-ops-workspace/arojearthdata/dps_output/arojas_biomass_gedi/master/single_file_test_run/2023/10/19/01/10/48/306256', 'https://s3.console.aws.amazon.com/s3/buckets/maap-ops-workspace/arojearthdata/dps_output/arojas_biomass_gedi/master/single_file_test_run/2023/10/19/01/10/48/306256/?region=us-east-1&tab=overview']\n" + "['http://maap-ops-workspace.s3-website-us-west-2.amazonaws.com/arojearthdata/dps_output/arojas_biomass_gedi/master/single_file_test_run/2023/10/19/01/44/37/145570', 's3://s3.us-west-2.amazonaws.com:80/maap-ops-workspace/arojearthdata/dps_output/arojas_biomass_gedi/master/single_file_test_run/2023/10/19/01/44/37/145570', 'https://s3.console.aws.amazon.com/s3/buckets/maap-ops-workspace/arojearthdata/dps_output/arojas_biomass_gedi/master/single_file_test_run/2023/10/19/01/44/37/145570/?region=us-east-1&tab=overview']\n" ] } ],