diff --git a/notebooks/run-gedi-biomass.ipynb b/notebooks/run-gedi-biomass.ipynb index 750f834a81b15030a279e2fc9d1a58b27ceddcf3..307883996c80b21cc3db27a68e5e37fdce4a6478 100644 --- a/notebooks/run-gedi-biomass.ipynb +++ b/notebooks/run-gedi-biomass.ipynb @@ -5,7 +5,17 @@ "execution_count": 1, "id": "25172537-794b-4135-bb28-63c0fcefbb68", "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "Unable to load config file from source maap.cfg \n", + "Unable to load config file from source ./maap.cfg \n", + "Unable to load config file from source /projects/maap.cfg \n" + ] + } + ], "source": [ "import os\n", "import re\n", @@ -87,7 +97,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "[{'job_id': '6910d9a3-4135-484c-b855-e0a498fe6077', 'status': 'Running', 'machine_type': None, 'architecture': None, 'machine_memory_size': None, 'directory_size': None, 'operating_system': None, 'job_start_time': None, 'job_end_time': None, 'job_duration_seconds': None, 'cpu_usage': None, 'cache_usage': None, 'mem_usage': None, 'max_mem_usage': None, 'swap_usage': None, 'read_io_stats': None, 'write_io_stats': None, 'sync_io_stats': None, 'async_io_stats': None, 'total_io_stats': None, 'error_details': None, 'response_code': 200, 'outputs': []}]\n" + "[{'job_id': '44d040c7-4db6-44af-817a-5c2cc7cd32f0', 'status': 'Running', 'machine_type': None, 'architecture': None, 'machine_memory_size': None, 'directory_size': None, 'operating_system': None, 'job_start_time': None, 'job_end_time': None, 'job_duration_seconds': None, 'cpu_usage': None, 'cache_usage': None, 'mem_usage': None, 'max_mem_usage': None, 'swap_usage': None, 'read_io_stats': None, 'write_io_stats': None, 'sync_io_stats': None, 'async_io_stats': None, 'total_io_stats': None, 'error_details': None, 'response_code': 200, 'outputs': []}]\n" ] } ], @@ -97,7 +107,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": 4, "id": "7fe1c6f4-37c5-4fe7-b9ff-51e17b7a5cf0", "metadata": {}, "outputs": [ @@ -106,7 +116,7 @@ "output_type": "stream", "text": [ "Running\n", - "6910d9a3-4135-484c-b855-e0a498fe6077\n" + "44d040c7-4db6-44af-817a-5c2cc7cd32f0\n" ] } ], @@ -120,7 +130,7 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": 10, "id": "2018077f-9640-4e70-bd01-a9d939b3626a", "metadata": {}, "outputs": [ @@ -129,7 +139,7 @@ "output_type": "stream", "text": [ "Failed\n", - "6910d9a3-4135-484c-b855-e0a498fe6077\n" + "44d040c7-4db6-44af-817a-5c2cc7cd32f0\n" ] } ], @@ -143,7 +153,7 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": 11, "id": "873e9ea7-d6cb-4bb9-b082-5bffb4026615", "metadata": {}, "outputs": [ @@ -151,7 +161,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "['http://maap-ops-workspace.s3-website-us-west-2.amazonaws.com/dataset/triaged_job/arojas_biomass_gedi_conus/master/2023/09/09/6910d9a3-4135-484c-b855-e0a498fe6077', 's3://s3-us-west-2.amazonaws.com:80/maap-ops-workspace/dataset/triaged_job/arojas_biomass_gedi_conus/master/2023/09/09/6910d9a3-4135-484c-b855-e0a498fe6077', 'https://s3.console.aws.amazon.com/s3/buckets/maap-ops-workspace/dataset/triaged_job/arojas_biomass_gedi_conus/master/2023/09/09/6910d9a3-4135-484c-b855-e0a498fe6077/?region=us-east-1&tab=overview', '+ export HOME=/root\\n+ HOME=/root\\n+ exec /docker-stats-on-exit-shim _docker_stats.json /app/dps_wrapper.sh /app/biomass-gedi-conus/run.sh \\'https://e4ftl01.cr.usgs.gov//GEDI_L1_L2/GEDI/GEDI01_B.002/2021.05.31/GEDI01_B_2021151223415_O13976_02_T00676_02_005_02_V002.h5\\n\\' https://e4ftl01.cr.usgs.gov//GEDI_L1_L2/GEDI/GEDI02_A.002/2021.05.31/GEDI02_A_2021151223415_O13976_02_T00676_02_003_02_V002.h5\\n+ /app/biomass-gedi-conus/run.sh \\'https://e4ftl01.cr.usgs.gov//GEDI_L1_L2/GEDI/GEDI01_B.002/2021.05.31/GEDI01_B_2021151223415_O13976_02_T00676_02_005_02_V002.h5\\n\\' https://e4ftl01.cr.usgs.gov//GEDI_L1_L2/GEDI/GEDI02_A.002/2021.05.31/GEDI02_A_2021151223415_O13976_02_T00676_02_003_02_V002.h5\\nTraceback (most recent call last):\\n File \"/app/biomass-gedi-conus/main.py\", line 22, in <module>\\n from download_gedi import download_gedi\\n File \"/app/biomass-gedi-conus/download_gedi.py\", line 3, in <module>\\n from maap.maap import MAAP\\nModuleNotFoundError: No module named \\'maap\\'\\n+ cp _stderr.txt _alt_traceback.txt\\n']\n" + "['http://maap-ops-workspace.s3-website-us-west-2.amazonaws.com/dataset/triaged_job/arojas_biomass_gedi_conus/master/2023/09/14/44d040c7-4db6-44af-817a-5c2cc7cd32f0', 's3://s3-us-west-2.amazonaws.com:80/maap-ops-workspace/dataset/triaged_job/arojas_biomass_gedi_conus/master/2023/09/14/44d040c7-4db6-44af-817a-5c2cc7cd32f0', 'https://s3.console.aws.amazon.com/s3/buckets/maap-ops-workspace/dataset/triaged_job/arojas_biomass_gedi_conus/master/2023/09/14/44d040c7-4db6-44af-817a-5c2cc7cd32f0/?region=us-east-1&tab=overview', '+ export HOME=/root\\n+ HOME=/root\\n+ exec /docker-stats-on-exit-shim _docker_stats.json /app/dps_wrapper.sh /app/biomass-gedi-conus/run.sh \\'https://e4ftl01.cr.usgs.gov//GEDI_L1_L2/GEDI/GEDI01_B.002/2021.05.31/GEDI01_B_2021151223415_O13976_02_T00676_02_005_02_V002.h5\\n\\' https://e4ftl01.cr.usgs.gov//GEDI_L1_L2/GEDI/GEDI02_A.002/2021.05.31/GEDI02_A_2021151223415_O13976_02_T00676_02_003_02_V002.h5\\n+ /app/biomass-gedi-conus/run.sh \\'https://e4ftl01.cr.usgs.gov//GEDI_L1_L2/GEDI/GEDI01_B.002/2021.05.31/GEDI01_B_2021151223415_O13976_02_T00676_02_005_02_V002.h5\\n\\' https://e4ftl01.cr.usgs.gov//GEDI_L1_L2/GEDI/GEDI02_A.002/2021.05.31/GEDI02_A_2021151223415_O13976_02_T00676_02_003_02_V002.h5\\nTraceback (most recent call last):\\n File \"/app/biomass-gedi-conus/main.py\", line 22, in <module>\\n from download_gedi import download_gedi\\n File \"/app/biomass-gedi-conus/download_gedi.py\", line 3, in <module>\\n from maap.maap import MAAP\\nModuleNotFoundError: No module named \\'maap\\'\\n+ cp _stderr.txt _alt_traceback.txt\\n']\n" ] } ],