From 03d4f8d216f5d0c3543a40fef253f799a978fc97 Mon Sep 17 00:00:00 2001
From: Alex Rojas <a.rojas8907@gmail.com>
Date: Thu, 30 Nov 2023 07:00:11 +0000
Subject: [PATCH] removed print statements
---
__pycache__/download_gedi.cpython-312.pyc | Bin 0 -> 1513 bytes
__pycache__/get_gedi_data.cpython-312.pyc | Bin 0 -> 1400 bytes
__pycache__/pgap.cpython-312.pyc | Bin 0 -> 13781 bytes
get_gedi_data.py | 9 +++---
main.py | 2 --
notebooks/run-gedi-biomass.ipynb | 34 +++++++++++-----------
6 files changed, 22 insertions(+), 23 deletions(-)
create mode 100644 __pycache__/download_gedi.cpython-312.pyc
create mode 100644 __pycache__/get_gedi_data.cpython-312.pyc
create mode 100644 __pycache__/pgap.cpython-312.pyc
diff --git a/__pycache__/download_gedi.cpython-312.pyc b/__pycache__/download_gedi.cpython-312.pyc
new file mode 100644
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diff --git a/get_gedi_data.py b/get_gedi_data.py
index fd77e7e..4ab61b4 100644
--- a/get_gedi_data.py
+++ b/get_gedi_data.py
@@ -1,4 +1,4 @@
-1import sys
+import sys
import h5py
import boto3
import botocore
@@ -21,7 +21,8 @@ def get_gedi_data(url):
secret=credentials['secretAccessKey'],
token=credentials['sessionToken']
)
- with s3.open(lpdaac_gedi_https_to_s3(url), "rb") as f:
- gedi_ds = h5py.File(f, "r")
-
+ # with s3.open(lpdaac_gedi_https_to_s3(url), "rb") as f:
+ # gedi_ds = h5py.File(f, "r")
+ # return gedi_ds
+ gedi_ds = h5py.File(s3.open(lpdaac_gedi_https_to_s3(url), "rb"), "r")
return gedi_ds
\ No newline at end of file
diff --git a/main.py b/main.py
index 025e500..08bc00d 100644
--- a/main.py
+++ b/main.py
@@ -69,13 +69,11 @@ def gedi_bioindex(index,l1b_ds,l2a_ds, beam, beam_filt, allom_df):
# get bioindex using HSE from NEON db analysis
beam_domain = beam_filt.loc[index]['DomainID']
- print(beam_domain)
try:
if pd.isnull(beam_domain):
cval = 1.63
else:
cval = allom_df[allom_df['domain']==beam_domain]['HSE'].values[0]
- print(cval)
# get pgap
pgap = GapDS(waveform_smooth, ht_arr, np.array([rh100]), calc_refl_vg = False,
utm_x=None,utm_y=None,cval=cval)
diff --git a/notebooks/run-gedi-biomass.ipynb b/notebooks/run-gedi-biomass.ipynb
index fcfacd9..29db5f1 100644
--- a/notebooks/run-gedi-biomass.ipynb
+++ b/notebooks/run-gedi-biomass.ipynb
@@ -2,7 +2,7 @@
"cells": [
{
"cell_type": "code",
- "execution_count": 7,
+ "execution_count": 1,
"id": "25172537-794b-4135-bb28-63c0fcefbb68",
"metadata": {},
"outputs": [
@@ -27,7 +27,7 @@
},
{
"cell_type": "code",
- "execution_count": 8,
+ "execution_count": 2,
"id": "f176e75b-5104-478b-ade6-a84006e966b0",
"metadata": {},
"outputs": [],
@@ -48,23 +48,12 @@
"execution_count": 4,
"id": "b0d65f96-5dad-44e9-ae85-9d4086c4b29f",
"metadata": {},
- "outputs": [
- {
- "data": {
- "text/plain": [
- "'https://e4ftl01.cr.usgs.gov//GEDI_L1_L2/GEDI/GEDI02_A.002/2022.08.31/GEDI02_A_2022243125140_O21055_03_T02667_02_003_02_V002.h5'"
- ]
- },
- "execution_count": 4,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
+ "outputs": [],
"source": []
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 3,
"id": "b39e76ac-d765-4b8c-baf1-fe41f3296de9",
"metadata": {},
"outputs": [
@@ -72,7 +61,18 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "on file num: 30\r"
+ "on file num: 200\r"
+ ]
+ },
+ {
+ "ename": "KeyboardInterrupt",
+ "evalue": "",
+ "output_type": "error",
+ "traceback": [
+ "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
+ "\u001b[0;31mKeyboardInterrupt\u001b[0m Traceback (most recent call last)",
+ "Cell \u001b[0;32mIn[3], line 35\u001b[0m\n\u001b[1;32m 33\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m counter\u001b[38;5;241m%\u001b[39m\u001b[38;5;241m100\u001b[39m\u001b[38;5;241m==\u001b[39m\u001b[38;5;241m0\u001b[39m:\n\u001b[1;32m 34\u001b[0m \u001b[38;5;28mprint\u001b[39m(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mon file num: \u001b[39m\u001b[38;5;124m\"\u001b[39m, counter, end\u001b[38;5;241m=\u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;130;01m\\r\u001b[39;00m\u001b[38;5;124m'\u001b[39m)\n\u001b[0;32m---> 35\u001b[0m \u001b[43mtime\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43msleep\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;241;43m600\u001b[39;49m\u001b[43m)\u001b[49m\n\u001b[1;32m 36\u001b[0m counter\u001b[38;5;241m+\u001b[39m\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m1\u001b[39m\n",
+ "\u001b[0;31mKeyboardInterrupt\u001b[0m: "
]
}
],
@@ -109,7 +109,7 @@
" L2A_URL=l2a_fp)\n",
" jobs_list.append(job)\n",
" \n",
- " if counter%10==0:\n",
+ " if counter%100==0:\n",
" print(\"on file num: \", counter, end='\\r')\n",
" time.sleep(600)\n",
" counter+=1"
--
GitLab